| SmithWatermanAligner Methods |
The SmithWatermanAligner type exposes the following members.
Methods| Name | Description | |
|---|---|---|
 | Align(IEnumerableISequence) |
Align aligns the set of input sequences using the affine gap model (gap open and gap extension penalties)
and returns the best alignment found.
(Inherited from PairwiseSequenceAligner.) |
| Align(ISequence, ISequence) |
Align aligns the set of input sequences using the affine gap model (gap open and gap extension penalties)
and returns the best alignment found.
(Inherited from PairwiseSequenceAligner.) |
| Align(SimilarityMatrix, Int32, Int32, ISequence, ISequence) |
Pairwise alignment of two sequences using an affine gap penalty. The various algorithms in derived classes (NeedlemanWunsch,
SmithWaterman, and PairwiseOverlap) all use this general engine for alignment with an affine gap penalty.
(Inherited from PairwiseSequenceAligner.) |
| AlignSimple(IEnumerableISequence) |
AlignSimple aligns the set of input sequences using the linear gap model (one gap penalty),
and returns the best alignment found.
(Inherited from PairwiseSequenceAligner.) |
| AlignSimple(ISequence, ISequence) |
AlignSimple aligns the set of input sequences using the linear gap model (one gap penalty),
and returns the best alignment found.
(Inherited from PairwiseSequenceAligner.) |
| AlignSimple(SimilarityMatrix, Int32, ISequence, ISequence) |
Pairwise alignment of two sequences using a linear gap penalty. The various algorithms in derived classes (NeedlemanWunsch,
SmithWaterman, and PairwiseOverlap) all use this general engine for alignment with a linear gap penalty.
(Inherited from PairwiseSequenceAligner.) |
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| ToString | Returns a string that represents the current object. (Inherited from Object.) |
See Also