Gets or sets the object that will be used to compute the alignment's consensus.

Gets the Description of the current Alignment algorithm used. This is a overridden property from the abstract parent. This property returns a simple description of what SmithWatermanAligner class implements.

Gets or sets value of GapExtensionCost The GapExtensionCost is the cost of extending an already existing gap. This is only used in the affine gap model

Gets or sets value of GapOpenCost The GapOpenCost is the cost of inserting a gap character into a sequence.

True to include the score table and matrix as part of the output. This is placed into the Metadata for the alignment. It is turned off by default due to the expense of generating it.

Gets the name of the current Alignment algorithm used. This is a overridden property from the abstract parent. This property returns the Name of our algorithm i.e Smith-Waterman algorithm.

Gets or sets value of similarity matrix The similarity matrix determines the score for any possible pair of symbols that are encountered at a common location across the sequences being aligned.