PairwiseSequenceAligner.AlignSimple Method (ISequence, ISequence)

PairwiseSequenceAlignerAlignSimple Method (ISequence, ISequence)

AlignSimple aligns the set of input sequences using the linear gap model (one gap penalty), and returns the best alignment found.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public IList<IPairwiseSequenceAlignment> AlignSimple(
	ISequence sequence1,
	ISequence sequence2
)

Public Function AlignSimple ( 
	sequence1 As ISequence,
	sequence2 As ISequence
) As IList(Of IPairwiseSequenceAlignment)

public:
virtual IList<IPairwiseSequenceAlignment^>^ AlignSimple(
	ISequence^ sequence1, 
	ISequence^ sequence2
) sealed

abstract AlignSimple : 
        sequence1 : ISequence * 
        sequence2 : ISequence -> IList<IPairwiseSequenceAlignment> 
override AlignSimple : 
        sequence1 : ISequence * 
        sequence2 : ISequence -> IList<IPairwiseSequenceAlignment>

Parameters

sequence1: Type: BioISequence
First sequence
sequence2: Type: BioISequence
Second sequence

Return Value

Type: IListIPairwiseSequenceAlignment
List of sequence alignments.

Implements

IPairwiseSequenceAlignerAlignSimple(ISequence, ISequence)

Reference

PairwiseSequenceAligner Class

AlignSimple Overload

Bio.Algorithms.Alignment Namespace