PairwiseSequenceAligner.Align Method (ISequence, ISequence)

PairwiseSequenceAlignerAlign Method (ISequence, ISequence)

Align aligns the set of input sequences using the affine gap model (gap open and gap extension penalties) and returns the best alignment found.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public IList<IPairwiseSequenceAlignment> Align(
	ISequence sequence1,
	ISequence sequence2
)

Public Function Align ( 
	sequence1 As ISequence,
	sequence2 As ISequence
) As IList(Of IPairwiseSequenceAlignment)

public:
virtual IList<IPairwiseSequenceAlignment^>^ Align(
	ISequence^ sequence1, 
	ISequence^ sequence2
) sealed

abstract Align : 
        sequence1 : ISequence * 
        sequence2 : ISequence -> IList<IPairwiseSequenceAlignment> 
override Align : 
        sequence1 : ISequence * 
        sequence2 : ISequence -> IList<IPairwiseSequenceAlignment>

Parameters

sequence1: Type: BioISequence
First sequence
sequence2: Type: BioISequence
Second sequence

Return Value

Type: IListIPairwiseSequenceAlignment
List of sequence alignments.

Implements

IPairwiseSequenceAlignerAlign(ISequence, ISequence)

Reference

PairwiseSequenceAligner Class

Align Overload

Bio.Algorithms.Alignment Namespace