IPairwiseSequenceAligner.Align Method (ISequence, ISequence)

IPairwiseSequenceAlignerAlign Method (ISequence, ISequence)

A convenience method - we know there are exactly two inputs. Align uses the affine gap model, which requires a gap open and a gap extension penalty.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

IList<IPairwiseSequenceAlignment> Align(
	ISequence sequence1,
	ISequence sequence2
)

Function Align ( 
	sequence1 As ISequence,
	sequence2 As ISequence
) As IList(Of IPairwiseSequenceAlignment)

IList<IPairwiseSequenceAlignment^>^ Align(
	ISequence^ sequence1, 
	ISequence^ sequence2
)

abstract Align : 
        sequence1 : ISequence * 
        sequence2 : ISequence -> IList<IPairwiseSequenceAlignment>

Type: IListIPairwiseSequenceAlignment
List of Aligned Sequences.