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ClusterBuilderBuildClusters Method (ListMatchExtension)
Get the Cluster from given inputs of matches. Steps are as follows: 1. Sort MUMs based on query sequence start. 2. Removing overlapping MUMs (in both sequences) and MUMs with same diagonal offset (usually adjacent) 3. Check for separation between two MUMs 4. Check the diagonal separation 5. If MUMs passes above conditions merge them in one cluster. 6. Sort MUMs using cluster id 7. Process clusters (Joining clusters)

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax
public List<Cluster> BuildClusters(
	List<MatchExtension> matchExtensions
)

Parameters

matchExtensions
Type: System.Collections.GenericListMatchExtension
List of maximum unique matches

Return Value

Type: ListCluster
List of Cluster

Implements

IClusterBuilderBuildClusters(ListMatchExtension)
See Also