ClusterBuilder Methods |
The ClusterBuilder type exposes the following members.
Name | Description | |
---|---|---|
BuildClusters(ListMatchExtension) |
Get the Cluster from given inputs of matches.
Steps are as follows:
1. Sort MUMs based on query sequence start.
2. Removing overlapping MUMs (in both sequences) and MUMs with same
diagonal offset (usually adjacent)
3. Check for separation between two MUMs
4. Check the diagonal separation
5. If MUMs passes above conditions merge them in one cluster.
6. Sort MUMs using cluster id
7. Process clusters (Joining clusters) | |
BuildClusters(ListMatchExtension, Boolean) |
Get the Cluster from given inputs of matches.
Steps are as follows:
1. Sort MUMs based on query sequence start (if sortedByQuerySequenceIndex is false)
2. Removing overlapping MUMs (in both sequences) and MUMs with same
diagonal offset (usually adjacent)
3. Check for separation between two MUMs
4. Check the diagonal separation
5. If MUMs passes above conditions merge them in one cluster.
6. Sort MUMs using cluster id
7. Process clusters (Joining clusters) | |
Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) | |
Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) | |
GetHashCode | Serves as the default hash function. (Inherited from Object.) | |
GetType | Gets the Type of the current instance. (Inherited from Object.) | |
MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) | |
ToString | Returns a string that represents the current object. (Inherited from Object.) |