SequenceToKmerBuilder Class

Constructs k-mers from given input sequence(s). For each input sequence, k-mers are constructed by sliding a frame of size kmerLength along the input sequence, and extracting sub-sequence inside the frame.

Inheritance Hierarchy

SystemObject
Bio.Algorithms.KmerSequenceToKmerBuilder

Namespace: Bio.Algorithms.Kmer
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public class SequenceToKmerBuilder : IKmerBuilder

Public Class SequenceToKmerBuilder
	Implements IKmerBuilder

public ref class SequenceToKmerBuilder : IKmerBuilder

type SequenceToKmerBuilder =  
    class
        interface IKmerBuilder
    end

The SequenceToKmerBuilder type exposes the following members.

Constructors

	Name	Description
	SequenceToKmerBuilder	Initializes a new instance of the SequenceToKmerBuilder class

Top

Methods

	Name	Description
	Build(ISequence, Int32)	For input sequence, constructs k-mers by sliding a frame of size kmerLength along the input sequence. Track positions of occurrence for each kmer in sequence. Constructs KmersOfSequence for sequence and associated k-mers.
	Build(IEnumerableISequence, Int32)	Builds k-mers from a list of given input sequences. For each sequence in input list, constructs a KmersOfSequence corresponding to the sequence and associated k-mers.
	BuildKmerDictionary(ISequence, Int32)	For input sequence, constructs k-mers by sliding a frame of size kmerLength along the input sequence. Track positions of occurance for each kmer in sequence. Constructs KmersOfSequence for sequence and associated k-mers.
	BuildKmerDictionary(IListISequence, Int32)	Builds k-mers from a list of given input sequences. For each sequence in input list, constructs a KmersOfSequence corresponding to the sequence and associated k-mers.
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	Finalize	Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.)
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetKmerSequences	Gets the set of kmer strings that occur in given sequences.
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	MemberwiseClone	Creates a shallow copy of the current Object. (Inherited from Object.)
	ToString	Returns a string that represents the current object. (Inherited from Object.)

Top

Reference

Bio.Algorithms.Kmer Namespace