SequenceToKmerBuilder.BuildKmerDictionary Method (ISequence, Int32)

SequenceToKmerBuilderBuildKmerDictionary Method (ISequence, Int32)

For input sequence, constructs k-mers by sliding a frame of size kmerLength along the input sequence. Track positions of occurance for each kmer in sequence. Constructs KmersOfSequence for sequence and associated k-mers.

Namespace: Bio.Algorithms.Kmer
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public static KmerPositionDictionary BuildKmerDictionary(
	ISequence sequence,
	int kmerLength
)

Public Shared Function BuildKmerDictionary ( 
	sequence As ISequence,
	kmerLength As Integer
) As KmerPositionDictionary

public:
static KmerPositionDictionary^ BuildKmerDictionary(
	ISequence^ sequence, 
	int kmerLength
)

static member BuildKmerDictionary : 
        sequence : ISequence * 
        kmerLength : int -> KmerPositionDictionary

Parameters

sequence: Type: BioISequence
Input sequence.
kmerLength: Type: SystemInt32
K-mer length.

Return Value

Type: KmerPositionDictionary
KmersOfSequence constructed from sequence and associated k-mers.

Reference

SequenceToKmerBuilder Class

BuildKmerDictionary Overload

Bio.Algorithms.Kmer Namespace