| Bio.Algorithms.Kmer Namespace |
[Missing <summary> documentation for "N:Bio.Algorithms.Kmer"]
Classes| Class | Description | |
|---|---|---|
 | KmerIndexer |
Structure that maintains sequence index, count information
and orientation for k-mer.
|
| KmerIndexerDictionary |
Wrapper for dictionary that maps kmer strings
to list of sequence index and positions of occurrence.
|
| KmerPositionDictionary |
Wrapper for dictionary that maps kmer strings
to list of positions of occurrence.
|
| KmersOfSequence |
Contains base sequence, and information regarding associated k-mers.
|
| KmersOfSequenceKmerPositions |
Contains information regarding k-mer
position in the base sequence.
|
| SequenceToKmerBuilder |
Constructs k-mers from given input sequence(s).
For each input sequence, k-mers are constructed by sliding
a frame of size kmerLength along the input sequence,
and extracting sub-sequence inside the frame.
|
Structures| Structure | Description | |
|---|---|---|
 | KmerData32 |
Holds the KmerData.
|
Interfaces| Interface | Description | |
|---|---|---|
 | IKmerBuilder |
This interface defines contract for classes that implement construction
of k-mer sequences from input sequences. It provides methods that take
input sequence(s) and construct corresponding k-mers.
|