| KmerData32 Structure |
Holds the KmerData.
Namespace: Bio.Algorithms.Kmer
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxThe KmerData32 type exposes the following members.
Properties
Methods| Name | Description | |
|---|---|---|
 | CompareTo(Object) |
Compares this instance to a specified instance of object and returns an indication of their relative values.
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| CompareTo(KmerData32) |
Compares this instance to a specified instance of IKmerData and returns an indication of their relative values.
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| Equals | Indicates whether this instance and a specified object are equal. (Inherited from ValueType.) |
| GetFirstSymbol |
Returns the first symbol of the sequence.
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| GetHashCode | Returns the hash code for this instance. (Inherited from ValueType.) |
| GetKmerData |
Returns the decompressed value of the kmer.
|
 | GetKmers |
Iterates through a sequence producing all possible kmers in it.
|
| GetLastSymbol |
Returns the last symbol of the sequence.
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| GetOriginalSymbols |
Returns the decompressed value of the kmer from the De-Bruijn node.
Note: use this method to get the original sequence symbols.
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| GetReverseComplementOfKmerData |
Returns the reverse complement of the kmer value.
|
| GetReverseComplementOfOriginalSymbols |
Note: use this method to get the original sequence symbols.
|
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| IsPalindrome |
Checks whether the kmer value is palindrome or not.
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| SetKmerData(Byte, Int32) |
Sets the kmer value from the specific sequence.
Note: Used in generating the links.
Do not use this method to add kmerData to the tree.
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| SetKmerData(UInt64, Int32) |
Sets the kmer value from the specific sequence.
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| SetKmerData(ISequence, Int64, Int32) |
Sets the kmer value from the specific sequence.
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| ToString | Returns the fully qualified type name of this instance. (Inherited from ValueType.) |
Fields| Name | Description | |
|---|---|---|
 | DNA_A_VALUE |
Value to encode an A with as 2 bits
|
| DNA_C_VALUE |
Value to encode a C with as 2 bits
|
| DNA_G_VALUE |
Value to encode a G with as 2 bits
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| DNA_T_VALUE |
Value to encode a T with as 2 bits
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| MAX_KMER_LENGTH |
Maximum allowed value for a kmer
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| MIN_KMER_LENGTH |
Minimum allowed value for a kmer
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See Also