| SAMParser Methods |
The SAMParser type exposes the following members.
Methods| Name | Description | |
|---|---|---|
 | Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
 | Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) |
| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) |
| Parse |
Parses a sequence alignment texts from a file.
|
| ParseOne |
Parses a sequence alignment texts from a stream.
|
| ParseOneWithSpecificFormat |
Parses alignments in SAM format from a reader into a SequenceAlignmentMap object.
|
 | ParseQualityNSequence(SAMAlignedSequence, IAlphabet, String, String) |
Parses sequence data and quality values and updates SAMAlignedSequence instance.
|
| ParseQualityNSequence(SAMAlignedSequence, IAlphabet, Byte, Byte, Boolean) |
Parses sequence data and quality values and updates SAMAlignedSequence instance.
|
| ParseSAMHeader(Stream) |
Parses SAM alignment header from specified stream.
|
| ParseSAMHeader(TextReader) |
Parses SAM alignment header from specified text reader.
|
| ParseSequence |
Parse a single sequence.
|
| ToString | Returns a string that represents the current object. (Inherited from Object.) |
See Also