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SAMParserParseOneWithSpecificFormat Method
Parses alignments in SAM format from a reader into a SequenceAlignmentMap object.

Namespace: Bio.IO.SAM
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax
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protected SequenceAlignmentMap ParseOneWithSpecificFormat(
	TextReader reader
)

Parameters

reader
Type: System.IOTextReader
A reader for a biological sequence alignment text.

Return Value

Type: SequenceAlignmentMap
A new SequenceAlignmentMap instance containing parsed data.
See Also