SAMParserParseQualityNSequence Method (SAMAlignedSequence, IAlphabet, Byte, Byte, Boolean) |
Parses sequence data and quality values and updates SAMAlignedSequence instance.
Namespace: Bio.IO.SAMAssembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax public static void ParseQualityNSequence(
SAMAlignedSequence alignedSeq,
IAlphabet alphabet,
byte[] sequencedata,
byte[] qualitydata,
bool validate = true
)
Public Shared Sub ParseQualityNSequence (
alignedSeq As SAMAlignedSequence,
alphabet As IAlphabet,
sequencedata As Byte(),
qualitydata As Byte(),
Optional validate As Boolean = true
)
public:
static void ParseQualityNSequence(
SAMAlignedSequence^ alignedSeq,
IAlphabet^ alphabet,
array<unsigned char>^ sequencedata,
array<unsigned char>^ qualitydata,
bool validate = true
)
static member ParseQualityNSequence :
alignedSeq : SAMAlignedSequence *
alphabet : IAlphabet *
sequencedata : byte[] *
qualitydata : byte[] *
?validate : bool
(* Defaults:
let _validate = defaultArg validate true
*)
-> unit
Parameters
- alignedSeq
- Type: Bio.IO.SAMSAMAlignedSequence
SAM aligned Sequence. - alphabet
- Type: BioIAlphabet
Alphabet of the sequence to be created. - sequencedata
- Type: SystemByte
Sequence data. - qualitydata
- Type: SystemByte
Quality values. - validate (Optional)
- Type: SystemBoolean
Validation needed
See Also