NucmerPairwiseAligner.Align Method (IEnumerable(ISequence), IEnumerable(ISequence))

NucmerPairwiseAlignerAlign Method (IEnumerableISequence, IEnumerableISequence)

Align aligns the set of input sequences using the affine gap model (gap open and gap extension penalties) and returns the best alignment found.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public IList<ISequenceAlignment> Align(
	IEnumerable<ISequence> referenceList,
	IEnumerable<ISequence> queryList
)

Public Function Align ( 
	referenceList As IEnumerable(Of ISequence),
	queryList As IEnumerable(Of ISequence)
) As IList(Of ISequenceAlignment)

public:
IList<ISequenceAlignment^>^ Align(
	IEnumerable<ISequence^>^ referenceList, 
	IEnumerable<ISequence^>^ queryList
)

member Align : 
        referenceList : IEnumerable<ISequence> * 
        queryList : IEnumerable<ISequence> -> IList<ISequenceAlignment>

Parameters

referenceList: Type: System.Collections.GenericIEnumerableISequence
Reference sequences.
queryList: Type: System.Collections.GenericIEnumerableISequence
Query sequences.

Return Value

Type: IListISequenceAlignment

[Missing <returns> documentation for "M:Bio.Algorithms.Alignment.NucmerPairwiseAligner.Align(System.Collections.Generic.IEnumerable{Bio.ISequence},System.Collections.Generic.IEnumerable{Bio.ISequence})"]

Reference

NucmerPairwiseAligner Class

Align Overload

Bio.Algorithms.Alignment Namespace