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NucmerPairwiseAligner Methods

The NucmerPairwiseAligner type exposes the following members.

Methods
  NameDescription
Public methodAlign(IEnumerableISequence)
Align aligns the set of input sequences using the affine gap model (gap open and gap extension penalties) and returns the best alignment found.
Public methodAlign(ISequence, IEnumerableISequence)
Align aligns the set of input sequences using the affine gap model (gap open and gap extension penalties) and returns the best alignment found.
Public methodAlign(IEnumerableISequence, IEnumerableISequence)
Align aligns the set of input sequences using the affine gap model (gap open and gap extension penalties) and returns the best alignment found.
Public methodAlignSimple
AlignSimple aligns the set of input sequences using the linear gap model (one gap penalty), and returns the best alignment found.
Protected methodCalculateScore
Calculate the score of alignment.
Protected methodStatic memberConcatSequence
Concat all the sequences into one sequence with special character.
Public methodEquals
Determines whether the specified object is equal to the current object.
(Inherited from Object.)
Protected methodFinalize
Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection.
(Inherited from Object.)
Public methodGetHashCode
Serves as the default hash function.
(Inherited from Object.)
Public methodGetType
Gets the Type of the current instance.
(Inherited from Object.)
Protected methodMakeConsensus
Analyze the given sequences and store a consensus into its Consensus property.
Protected methodMemberwiseClone
Creates a shallow copy of the current Object.
(Inherited from Object.)
Public methodToString
Returns a string that represents the current object.
(Inherited from Object.)
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See Also