NucmerPairwiseAligner.AlignSimple Method

NucmerPairwiseAlignerAlignSimple Method

AlignSimple aligns the set of input sequences using the linear gap model (one gap penalty), and returns the best alignment found.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public IList<ISequenceAlignment> AlignSimple(
	IEnumerable<ISequence> inputSequences
)

Public Function AlignSimple ( 
	inputSequences As IEnumerable(Of ISequence)
) As IList(Of ISequenceAlignment)

public:
virtual IList<ISequenceAlignment^>^ AlignSimple(
	IEnumerable<ISequence^>^ inputSequences
) sealed

abstract AlignSimple : 
        inputSequences : IEnumerable<ISequence> -> IList<ISequenceAlignment> 
override AlignSimple : 
        inputSequences : IEnumerable<ISequence> -> IList<ISequenceAlignment>

Parameters

inputSequences: Type: System.Collections.GenericIEnumerableISequence
The sequences to align.

Return Value

Type: IListISequenceAlignment
List of sequence alignments.

Implements

ISequenceAlignerAlignSimple(IEnumerableISequence)

Reference

NucmerPairwiseAligner Class

Bio.Algorithms.Alignment Namespace