DynamicProgrammingPairwiseAlignerJob.ComputeIntermediateBlock Method

DynamicProgrammingPairwiseAlignerJobComputeIntermediateBlock Method

Computes weights for all blocks of the grid except the lower-right corner one. Assumes the grid cache to the left and top of the block has already been filled. Weights on the bottom and right edge of the block are written back to the grid.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

protected abstract void ComputeIntermediateBlock(
	int blockRow,
	int blockCol,
	int lastRow,
	int lastCol
)

Protected MustOverride Sub ComputeIntermediateBlock ( 
	blockRow As Integer,
	blockCol As Integer,
	lastRow As Integer,
	lastCol As Integer
)

protected:
virtual void ComputeIntermediateBlock(
	int blockRow, 
	int blockCol, 
	int lastRow, 
	int lastCol
) abstract

abstract ComputeIntermediateBlock : 
        blockRow : int * 
        blockCol : int * 
        lastRow : int * 
        lastCol : int -> unit

Parameters

blockRow: Type: SystemInt32
First index of the block within the grid
blockCol: Type: SystemInt32
Second index of the block within the grid
lastRow: Type: SystemInt32
Last valid row index within the block; rows beyond this index stay uninitialized
lastCol: Type: SystemInt32
Last valid column index within the block; columns beyond this index stay uninitialized

Reference

DynamicProgrammingPairwiseAlignerJob Class

Bio.Algorithms.Alignment Namespace