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DynamicProgrammingPairwiseAlignerJobComputeBlockAffine Method
Implementation of the linear programming model for the block using the affine gap cost model

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax
protected void ComputeBlockAffine(
	DynamicProgrammingPairwiseAlignerJobWeightFunction weightFunction,
	int blockRow,
	int blockCol,
	int lastRow,
	int lastCol
)

Parameters

weightFunction
Type: Bio.Algorithms.AlignmentDynamicProgrammingPairwiseAlignerJobWeightFunction
Algorith-specific weight function
blockRow
Type: SystemInt32
First index of the block within the grid
blockCol
Type: SystemInt32
Second index of the block within the grid
lastRow
Type: SystemInt32
Last valid row index within the block; rows beyond this index stay uninitialized
lastCol
Type: SystemInt32
Last valid column index within the block; columns beyond this index stay uninitialized
See Also