DynamicProgrammingPairwiseAlignerJobComputeBlockAffine Method |
Implementation of the linear programming model for the block using the affine gap cost model
Namespace: Bio.Algorithms.AlignmentAssembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax protected void ComputeBlockAffine(
DynamicProgrammingPairwiseAlignerJobWeightFunction weightFunction,
int blockRow,
int blockCol,
int lastRow,
int lastCol
)
Protected Sub ComputeBlockAffine (
weightFunction As DynamicProgrammingPairwiseAlignerJobWeightFunction,
blockRow As Integer,
blockCol As Integer,
lastRow As Integer,
lastCol As Integer
)
protected:
void ComputeBlockAffine(
DynamicProgrammingPairwiseAlignerJobWeightFunction^ weightFunction,
int blockRow,
int blockCol,
int lastRow,
int lastCol
)
member ComputeBlockAffine :
weightFunction : DynamicProgrammingPairwiseAlignerJobWeightFunction *
blockRow : int *
blockCol : int *
lastRow : int *
lastCol : int -> unit
Parameters
- weightFunction
- Type: Bio.Algorithms.AlignmentDynamicProgrammingPairwiseAlignerJobWeightFunction
Algorith-specific weight function - blockRow
- Type: SystemInt32
First index of the block within the grid - blockCol
- Type: SystemInt32
Second index of the block within the grid - lastRow
- Type: SystemInt32
Last valid row index within the block; rows beyond this index stay uninitialized - lastCol
- Type: SystemInt32
Last valid column index within the block; columns beyond this index stay uninitialized
See Also