MUMmerAligner.AlignSimple Method (ISequence, IEnumerable(ISequence))

MUMmerAlignerAlignSimple Method (ISequence, IEnumerableISequence)

Align the reference sequence and query sequences using an affine gap model.

Namespace: Bio.Algorithms.MUMmer
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public IList<IPairwiseSequenceAlignment> AlignSimple(
	ISequence referenceSequence,
	IEnumerable<ISequence> querySequenceList
)

Public Function AlignSimple ( 
	referenceSequence As ISequence,
	querySequenceList As IEnumerable(Of ISequence)
) As IList(Of IPairwiseSequenceAlignment)

public:
IList<IPairwiseSequenceAlignment^>^ AlignSimple(
	ISequence^ referenceSequence, 
	IEnumerable<ISequence^>^ querySequenceList
)

member AlignSimple : 
        referenceSequence : ISequence * 
        querySequenceList : IEnumerable<ISequence> -> IList<IPairwiseSequenceAlignment>

Parameters

referenceSequence: Type: BioISequence
Reference sequence.
querySequenceList: Type: System.Collections.GenericIEnumerableISequence
List of query sequence.

Return Value

Type: IListIPairwiseSequenceAlignment
A list of sequence alignments.

Reference

MUMmerAligner Class

AlignSimple Overload

Bio.Algorithms.MUMmer Namespace