| Bio.Algorithms.MUMmer Namespace |
[Missing <summary> documentation for "N:Bio.Algorithms.MUMmer"]
Classes| Class | Description | |
|---|---|---|
 | MUMmer |
MUMmer is a system for rapidly aligning entire genomes or very large protein
sequences. It is a pair wise sequence algorithm. The algorithm assumes the
sequences are closely related, and using this assumption can quickly compare
sequences that are millions of nucleotides in length. The algorithm is
designed to perform high resolution comparison of genome-length sequences.
|
| MUMmerAligner |
This class is used for Align MUMs.
|
| MummerAlphabetExtensions |
Class to get the MUMmer alphabet corresponding to the specified alphabet.
|
| MUMmerAttributes |
This class extends PairwiseAlignmentAttributes and adds MUMmer specific attributes
required to run the MUMmer algorithm.
|
| MummerDnaAlphabet |
Alphabet for use by MUMmer to support concatenation character '+'
|
| MummerProteinAlphabet |
Alphabet for use by MUMmer to support concatenation character '+'
|
| MummerRnaAlphabet |
Alphabet for use by MUMmer to support concatenation character '+'
|