NUCmer.ProcessCluster Method

NUCmerProcessCluster Method

Process the cluster 1. Re-map the reference sequence index to original index 2. Create synteny 3. Process synteny

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public IEnumerable<DeltaAlignment> ProcessCluster(
	IList<Cluster> clusters
)

Public Function ProcessCluster ( 
	clusters As IList(Of Cluster)
) As IEnumerable(Of DeltaAlignment)

public:
IEnumerable<DeltaAlignment^>^ ProcessCluster(
	IList<Cluster^>^ clusters
)

member ProcessCluster : 
        clusters : IList<Cluster> -> IEnumerable<DeltaAlignment>

clusters: Type: System.Collections.GenericIListCluster
List of clusters of a read.

Type: IEnumerableDeltaAlignment
List of delta alignments