NUCmerGetDeltaAlignments Method |
Generates Delta Alignments.
Namespace: Bio.Algorithms.AlignmentAssembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax public IEnumerable<DeltaAlignment> GetDeltaAlignments(
ISequence querySequence,
bool isUniqueInReference = true,
bool isReversed = false
)
Public Function GetDeltaAlignments (
querySequence As ISequence,
Optional isUniqueInReference As Boolean = true,
Optional isReversed As Boolean = false
) As IEnumerable(Of DeltaAlignment)
public:
IEnumerable<DeltaAlignment^>^ GetDeltaAlignments(
ISequence^ querySequence,
bool isUniqueInReference = true,
bool isReversed = false
)
member GetDeltaAlignments :
querySequence : ISequence *
?isUniqueInReference : bool *
?isReversed : bool
(* Defaults:
let _isUniqueInReference = defaultArg isUniqueInReference true
let _isReversed = defaultArg isReversed false
*)
-> IEnumerable<DeltaAlignment>
Parameters
- querySequence
- Type: BioISequence
Query Sequence - isUniqueInReference (Optional)
- Type: SystemBoolean
Whether MUMs are unique in query or not. - isReversed (Optional)
- Type: SystemBoolean
True if the query sequence is a reverse-complement
Return Value
Type:
IEnumerableDeltaAlignmentList of enumerable of delta alignments.
See Also