| MummerProteinAlphabet Methods |
The MummerProteinAlphabet type exposes the following members.
Methods| Name | Description | |
|---|---|---|
 | AddAminoAcid |
Adds a Amino acid to the existing amino acids.
(Inherited from ProteinAlphabet.) |
 | CheckIsAmbiguous |
Checks if the provided item is an ambiguous character or not
(Inherited from ProteinAlphabet.) |
| CheckIsGap |
Checks if the provided item is a gap character or not
(Inherited from ProteinAlphabet.) |
| CompareSymbols |
Compares two symbols.
(Inherited from ProteinAlphabet.) |
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
| Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) |
| GetAmbiguousSymbols |
Gets the ambigious characters present in alphabet.
(Inherited from ProteinAlphabet.) |
| GetConsensusSymbol |
Find the consensus nucleotide for a set of nucleotides.
(Inherited from AmbiguousProteinAlphabet.) |
| GetEnumerator |
Byte array of nucleotides.
(Inherited from ProteinAlphabet.) |
| GetFriendlyName |
Gets the friendly name of a given symbol.
(Inherited from ProteinAlphabet.) |
| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
| GetSymbolValueMap |
Maps A to A and a to A
that is key will contain unique values.
This will be used in the IsValidSymbol method to address Scenarios like a == A, G == g etc.
(Inherited from ProteinAlphabet.) |
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| GetValidSymbols |
Gets the valid symbol.
(Inherited from ProteinAlphabet.) |
| MapAmbiguousAminoAcid |
Maps the ambiguous amino acids to the amino acids it represents.
For example ambiguous amino acids M represents the basic nucleotides A or C.
(Inherited from ProteinAlphabet.) |
| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) |
| ToString |
Converts the Protein Alphabets to string.
(Inherited from ProteinAlphabet.) |
| TryGetAmbiguousSymbol |
Gets the Ambiguous symbol.
(Inherited from ProteinAlphabet.) |
| TryGetBasicSymbols |
Gets the Basic symbol.
(Inherited from ProteinAlphabet.) |
| TryGetComplementSymbol(Byte, Byte) |
Gets the complement of the symbol.
(Inherited from ProteinAlphabet.) |
| TryGetComplementSymbol(Byte, Byte) |
This method tries to get the complements for specified symbols.
(Inherited from ProteinAlphabet.) |
| TryGetDefaultGapSymbol |
Gets the default Gap symbol.
(Inherited from ProteinAlphabet.) |
| TryGetDefaultTerminationSymbol |
Gets the default Termination symbol.
(Inherited from ProteinAlphabet.) |
| TryGetGapSymbols |
Gets the Gap symbol.
(Inherited from ProteinAlphabet.) |
| TryGetTerminationSymbols |
Gets the Termination symbol.
(Inherited from ProteinAlphabet.) |
| ValidateSequence |
Validates if all symbols provided are Protein symbols or not.
(Inherited from ProteinAlphabet.) |
See Also