AmbiguousProteinAlphabet Class |
Namespace: Bio
The AmbiguousProteinAlphabet type exposes the following members.
Name | Description | |
---|---|---|
AmbiguousProteinAlphabet |
Initializes a new instance of the AmbiguousProteinAlphabet class.
|
Name | Description | |
---|---|---|
A |
Gets the Alanine Amino acid.
(Inherited from ProteinAlphabet.) | |
B |
Gets the Aspartic Acid or Asparagine.
| |
C |
Gets the Cysteine Amino acid.
(Inherited from ProteinAlphabet.) | |
Count |
Gets count of nucleotides.
(Inherited from ProteinAlphabet.) | |
D |
Gets the Aspartic Acid.
(Inherited from ProteinAlphabet.) | |
E |
Gets the Glutamic Acid.
(Inherited from ProteinAlphabet.) | |
F |
Gets the Phenylalanine Amino acid.
(Inherited from ProteinAlphabet.) | |
G |
Gets the Glycine Amino acid.
(Inherited from ProteinAlphabet.) | |
Gap |
Gets the Gap character.
(Inherited from ProteinAlphabet.) | |
H |
Gets the Histidine Amino acid.
(Inherited from ProteinAlphabet.) | |
HasAmbiguity |
Gets or sets a value indicating whether this alphabet has ambiguous characters.
This alphabet does have ambiguous characters.
(Inherited from ProteinAlphabet.) | |
HasGaps |
Gets or sets a value indicating whether this alphabet has a gap character.
This alphabet does have a gap character.
(Inherited from ProteinAlphabet.) | |
HasTerminations |
Gets or sets a value indicating whether this alphabet has termination characters.
This alphabet does have termination characters.
(Inherited from ProteinAlphabet.) | |
I |
Gets the Isoleucine Amino acid.
(Inherited from ProteinAlphabet.) | |
IsComplementSupported |
Gets or sets a value indicating whether complement is supported or not.
(Inherited from ProteinAlphabet.) | |
Item |
Gets the byte value of item at the given index.
(Inherited from ProteinAlphabet.) | |
J |
Gets the Leucine or Isoleucine.
| |
K |
Gets the Lysine Amino acid.
(Inherited from ProteinAlphabet.) | |
L |
Gets the Leucine Amino acid.
(Inherited from ProteinAlphabet.) | |
M |
Gets the Methionine Amino acid.
(Inherited from ProteinAlphabet.) | |
N |
Gets the Asparagine Amino acid.
(Inherited from ProteinAlphabet.) | |
Name |
Gets or sets the name of this alphabet - this is always 'Protein'.
(Inherited from ProteinAlphabet.) | |
O |
Gets the Pyrrolysine Amino acid.
(Inherited from ProteinAlphabet.) | |
P |
Gets the Proline Amino acid.
(Inherited from ProteinAlphabet.) | |
Q |
Gets the Glutamine Amino acid.
(Inherited from ProteinAlphabet.) | |
R |
Gets the Arginine Amino acid.
(Inherited from ProteinAlphabet.) | |
S |
Gets the Serine Amino acid.
(Inherited from ProteinAlphabet.) | |
T |
Gets the Threoine Amino acid.
(Inherited from ProteinAlphabet.) | |
Ter |
Gets the Termination character.
(Inherited from ProteinAlphabet.) | |
U |
Gets the Selenocysteine Amino acid.
(Inherited from ProteinAlphabet.) | |
V |
Gets the Valine Amino acid.
(Inherited from ProteinAlphabet.) | |
W |
Gets the Tryptophan Amino acid.
(Inherited from ProteinAlphabet.) | |
X |
Gets X - Xxx - Undetermined or atypical.
| |
Y |
Gets the Tyrosine Amino acid.
(Inherited from ProteinAlphabet.) | |
Z |
Gets Z - Glx - Glutamic Acid or Glutamine.
|
Name | Description | |
---|---|---|
AddAminoAcid |
Adds a Amino acid to the existing amino acids.
(Inherited from ProteinAlphabet.) | |
CheckIsAmbiguous |
Checks if the provided item is an ambiguous character or not
(Inherited from ProteinAlphabet.) | |
CheckIsGap |
Checks if the provided item is a gap character or not
(Inherited from ProteinAlphabet.) | |
CompareSymbols |
Compares two symbols.
(Inherited from ProteinAlphabet.) | |
Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) | |
Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) | |
GetAmbiguousSymbols |
Gets the ambigious characters present in alphabet.
(Inherited from ProteinAlphabet.) | |
GetConsensusSymbol |
Find the consensus nucleotide for a set of nucleotides.
(Overrides ProteinAlphabetGetConsensusSymbol(HashSetByte).) | |
GetEnumerator |
Byte array of nucleotides.
(Inherited from ProteinAlphabet.) | |
GetFriendlyName |
Gets the friendly name of a given symbol.
(Inherited from ProteinAlphabet.) | |
GetHashCode | Serves as the default hash function. (Inherited from Object.) | |
GetSymbolValueMap |
Maps A to A and a to A
that is key will contain unique values.
This will be used in the IsValidSymbol method to address Scenarios like a == A, G == g etc.
(Inherited from ProteinAlphabet.) | |
GetType | Gets the Type of the current instance. (Inherited from Object.) | |
GetValidSymbols |
Gets the valid symbol.
(Inherited from ProteinAlphabet.) | |
MapAmbiguousAminoAcid |
Maps the ambiguous amino acids to the amino acids it represents.
For example ambiguous amino acids M represents the basic nucleotides A or C.
(Inherited from ProteinAlphabet.) | |
MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) | |
ToString |
Converts the Protein Alphabets to string.
(Inherited from ProteinAlphabet.) | |
TryGetAmbiguousSymbol |
Gets the Ambiguous symbol.
(Inherited from ProteinAlphabet.) | |
TryGetBasicSymbols |
Gets the Basic symbol.
(Inherited from ProteinAlphabet.) | |
TryGetComplementSymbol(Byte, Byte) |
Gets the complement of the symbol.
(Inherited from ProteinAlphabet.) | |
TryGetComplementSymbol(Byte, Byte) |
This method tries to get the complements for specified symbols.
(Inherited from ProteinAlphabet.) | |
TryGetDefaultGapSymbol |
Gets the default Gap symbol.
(Inherited from ProteinAlphabet.) | |
TryGetDefaultTerminationSymbol |
Gets the default Termination symbol.
(Inherited from ProteinAlphabet.) | |
TryGetGapSymbols |
Gets the Gap symbol.
(Inherited from ProteinAlphabet.) | |
TryGetTerminationSymbols |
Gets the Termination symbol.
(Inherited from ProteinAlphabet.) | |
ValidateSequence |
Validates if all symbols provided are Protein symbols or not.
(Inherited from ProteinAlphabet.) |