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AmbiguousProteinAlphabet Methods

The AmbiguousProteinAlphabet type exposes the following members.

Methods
  NameDescription
Protected methodAddAminoAcid
Adds a Amino acid to the existing amino acids.
(Inherited from ProteinAlphabet.)
Public methodCheckIsAmbiguous
Checks if the provided item is an ambiguous character or not
(Inherited from ProteinAlphabet.)
Public methodCheckIsGap
Checks if the provided item is a gap character or not
(Inherited from ProteinAlphabet.)
Public methodCompareSymbols
Compares two symbols.
(Inherited from ProteinAlphabet.)
Public methodEquals
Determines whether the specified object is equal to the current object.
(Inherited from Object.)
Protected methodFinalize
Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection.
(Inherited from Object.)
Public methodGetAmbiguousSymbols
Gets the ambigious characters present in alphabet.
(Inherited from ProteinAlphabet.)
Public methodGetConsensusSymbol
Find the consensus nucleotide for a set of nucleotides.
(Overrides ProteinAlphabetGetConsensusSymbol(HashSetByte).)
Public methodGetEnumerator
Byte array of nucleotides.
(Inherited from ProteinAlphabet.)
Public methodGetFriendlyName
Gets the friendly name of a given symbol.
(Inherited from ProteinAlphabet.)
Public methodGetHashCode
Serves as the default hash function.
(Inherited from Object.)
Public methodGetSymbolValueMap
Maps A to A and a to A that is key will contain unique values. This will be used in the IsValidSymbol method to address Scenarios like a == A, G == g etc.
(Inherited from ProteinAlphabet.)
Public methodGetType
Gets the Type of the current instance.
(Inherited from Object.)
Public methodGetValidSymbols
Gets the valid symbol.
(Inherited from ProteinAlphabet.)
Protected methodMapAmbiguousAminoAcid
Maps the ambiguous amino acids to the amino acids it represents. For example ambiguous amino acids M represents the basic nucleotides A or C.
(Inherited from ProteinAlphabet.)
Protected methodMemberwiseClone
Creates a shallow copy of the current Object.
(Inherited from Object.)
Public methodToString
Converts the Protein Alphabets to string.
(Inherited from ProteinAlphabet.)
Public methodTryGetAmbiguousSymbol
Gets the Ambiguous symbol.
(Inherited from ProteinAlphabet.)
Public methodTryGetBasicSymbols
Gets the Basic symbol.
(Inherited from ProteinAlphabet.)
Public methodTryGetComplementSymbol(Byte, Byte)
Gets the complement of the symbol.
(Inherited from ProteinAlphabet.)
Public methodTryGetComplementSymbol(Byte, Byte)
This method tries to get the complements for specified symbols.
(Inherited from ProteinAlphabet.)
Public methodTryGetDefaultGapSymbol
Gets the default Gap symbol.
(Inherited from ProteinAlphabet.)
Public methodTryGetDefaultTerminationSymbol
Gets the default Termination symbol.
(Inherited from ProteinAlphabet.)
Public methodTryGetGapSymbols
Gets the Gap symbol.
(Inherited from ProteinAlphabet.)
Public methodTryGetTerminationSymbols
Gets the Termination symbol.
(Inherited from ProteinAlphabet.)
Public methodValidateSequence
Validates if all symbols provided are Protein symbols or not.
(Inherited from ProteinAlphabet.)
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See Also