| PairedRead Class |
Class to hold Paired reads.
Inheritance HierarchyNamespace: Bio.IO.SAM
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxThe PairedRead type exposes the following members.
Constructors| Name | Description | |
|---|---|---|
 | PairedRead | Initializes a new instance of the PairedRead class |
Properties| Name | Description | |
|---|---|---|
 | InsertLength |
Gets or sets the insert length.
|
| PairedType |
Paired type PairedReadType |
| Read1 |
First aligned sequence or read.
|
| Read2 |
Second aligned sequence or read.
|
| Reads |
Gets the list of paired reads.
|
Methods| Name | Description | |
|---|---|---|
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
 | Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) |
| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
 | GetInsertLength(SAMAlignedSequence, SAMAlignedSequence) |
Gets the insert length of reads.
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| GetInsertLength(SAMAlignedSequence, SAMAlignedSequence, Boolean) |
Gets the insert length of reads.
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| GetPairedReadType(PairedRead, CloneLibraryInformation) |
Gets the paired reads type.
|
| GetPairedReadType(PairedRead, String) |
Gets the paired reads type.
|
| GetPairedReadType(PairedRead, CloneLibraryInformation, Boolean) |
Gets the paired reads type.
|
| GetPairedReadType(PairedRead, Single, Single) |
Gets the paired reads type.
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| GetPairedReadType(PairedRead, String, Boolean) |
Gets the paired reads type.
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| GetPairedReadType(SAMAlignedSequence, SAMAlignedSequence, CloneLibraryInformation) |
Gets the paired reads type.
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| GetPairedReadType(SAMAlignedSequence, SAMAlignedSequence, String) |
Gets the paired reads type.
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| GetPairedReadType(PairedRead, Single, Single, Boolean) |
Gets the paired reads type.
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| GetPairedReadType(SAMAlignedSequence, SAMAlignedSequence, Single, Single) |
Gets the paired reads type.
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| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| IsForwardRead |
Gets a boolean value which indicates that whether the specified read is forward oriented or not.
|
| IsReverseRead |
Gets a boolean value which indicates that whether the specified read is reverse oriented or not.
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| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) |
| ToString | Returns a string that represents the current object. (Inherited from Object.) |
See Also