| PairedReadType Enumeration |
Specifies the type of paired read.
Namespace: Bio.IO.SAM
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxMembers| Member name | Value | Description | |
|---|---|---|---|
| Normal | 0 | Normal - Reads are aligning to same reference sequence and insertion length is with in the limit. | |
| Orphan | 1 | Orphan - One read is not aligned to any reference sequence. | |
| Chimera | 2 | Chimera - Reads are not aligning to same reference sequence. | |
| StructuralAnomaly | 3 | StructuralAnomaly - Reads are not in proper orientation. | |
| LengthAnomaly | 4 | LengthAnomaly - Insertion length is either too short or too long. | |
| MultipleHits | 5 | MultipleHits - A mapped read pair is stored in more than two aligned sequences. |
See Also