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MUMmerAlignerGapOpenCost Property
Gets or sets gap open penalty for use in alignment algorithms. For alignments using a linear gap penalty, this is the gap penalty. For alignments using an affine gap, this is the penalty to open a new gap. This is a negative number, for example GapOpenCost = -8, not +8.

Namespace: Bio.Algorithms.MUMmer
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax
public int GapOpenCost { get; set; }

Property Value

Type: Int32

Implements

ISequenceAlignerGapOpenCost
See Also