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PairwiseOverlapSimpleAlignmentJob Constructor (SimilarityMatrix, Int32, ISequence, ISequence)
Inializes a new alignment job

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax
public PairwiseOverlapSimpleAlignmentJob(
	SimilarityMatrix similarityMatrix,
	int gapOpenCost,
	ISequence aInput,
	ISequence bInput
)

Parameters

similarityMatrix
Type: Bio.SimilarityMatricesSimilarityMatrix

[Missing <param name="similarityMatrix"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,Bio.ISequence,Bio.ISequence)"]

gapOpenCost
Type: SystemInt32

[Missing <param name="gapOpenCost"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,Bio.ISequence,Bio.ISequence)"]

aInput
Type: BioISequence

[Missing <param name="aInput"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,Bio.ISequence,Bio.ISequence)"]

bInput
Type: BioISequence

[Missing <param name="bInput"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,Bio.ISequence,Bio.ISequence)"]

See Also