SimilarityMatrix Class

Representation of a matrix that contains similarity scores for every pair of symbols in an alphabet. BLOSUM and PAM are well-known examples.

Inheritance Hierarchy

Namespace: Bio.SimilarityMatrices
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public class SimilarityMatrix

Public Class SimilarityMatrix

public ref class SimilarityMatrix

type SimilarityMatrix =  class end

The SimilarityMatrix type exposes the following members.

Constructors

	Name	Description
	SimilarityMatrix	Initializes a new instance of the SimilarityMatrix class.
	SimilarityMatrix(TextReader)	Initializes a new instance of the SimilarityMatrix class. Constructs SimilarityMatrix from an input stream.
	SimilarityMatrix(SimilarityMatrixStandardSimilarityMatrix)	Initializes a new instance of the SimilarityMatrix class Constructs one of the standard similarity matrices.

Properties

	Name	Description
	Item	Returns value of matrix at [row, col].
	Matrix	Gets or sets similarity matrix values in a 2-D integer array.
	Name	Gets or sets descriptive name of the particular SimilarityMatrix being used.

Methods

	Name	Description
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	Finalize	Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.)
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	MemberwiseClone	Creates a shallow copy of the current Object. (Inherited from Object.)
	ToString	Returns a string that represents the current object. (Inherited from Object.)
	ValidateSequence	Confirms that there is a symbol in the similarity matrix for every symbol in the sequence.

Fields

	Name	Description
	supportedAlphabets