protected PairwiseOverlapSimpleAlignmentJob(
	SimilarityMatrix similarityMatrix,
	int gapOpenCost,
	int gapExtensionCost,
	ISequence aInput,
	ISequence bInput
)

Protected Sub New ( 
	similarityMatrix As SimilarityMatrix,
	gapOpenCost As Integer,
	gapExtensionCost As Integer,
	aInput As ISequence,
	bInput As ISequence
)

protected:
PairwiseOverlapSimpleAlignmentJob(
	SimilarityMatrix^ similarityMatrix, 
	int gapOpenCost, 
	int gapExtensionCost, 
	ISequence^ aInput, 
	ISequence^ bInput
)

new : 
        similarityMatrix : SimilarityMatrix * 
        gapOpenCost : int * 
        gapExtensionCost : int * 
        aInput : ISequence * 
        bInput : ISequence -> PairwiseOverlapSimpleAlignmentJob

Parameters

similarityMatrix

Type: Bio.SimilarityMatricesSimilarityMatrix

[Missing <param name="similarityMatrix"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,System.Int32,Bio.ISequence,Bio.ISequence)"]

gapOpenCost

Type: SystemInt32

[Missing <param name="gapOpenCost"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,System.Int32,Bio.ISequence,Bio.ISequence)"]

gapExtensionCost

Type: SystemInt32

[Missing <param name="gapExtensionCost"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,System.Int32,Bio.ISequence,Bio.ISequence)"]

aInput

Type: BioISequence

[Missing <param name="aInput"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,System.Int32,Bio.ISequence,Bio.ISequence)"]

bInput

Type: BioISequence

[Missing <param name="bInput"/> documentation for "M:Bio.Algorithms.Alignment.PairwiseOverlapSimpleAlignmentJob.#ctor(Bio.SimilarityMatrices.SimilarityMatrix,System.Int32,System.Int32,Bio.ISequence,Bio.ISequence)"]

Reference