BAMFormatter.Format Method (Stream, ISequenceAlignment)

BAMFormatterFormat Method (Stream, ISequenceAlignment)

Writes specified alignment object to a stream. The output is formatted according to the BAM specification. Note that this method does not create index file.

Namespace: Bio.IO.BAM
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public void Format(
	Stream writer,
	ISequenceAlignment sequenceAlignment
)

Public Sub Format ( 
	writer As Stream,
	sequenceAlignment As ISequenceAlignment
)

public:
virtual void Format(
	Stream^ writer, 
	ISequenceAlignment^ sequenceAlignment
) sealed

abstract Format : 
        writer : Stream * 
        sequenceAlignment : ISequenceAlignment -> unit 
override Format : 
        writer : Stream * 
        sequenceAlignment : ISequenceAlignment -> unit

Parameters

writer: Type: System.IOStream
Stream to write BAM data.
sequenceAlignment: Type: Bio.Algorithms.AlignmentISequenceAlignment
SequenceAlignmentMap object.

Implements

IFormatterTFormat(Stream, T)

Reference

BAMFormatter Class

Format Overload

Bio.IO.BAM Namespace