BAMFormatter Methods

The BAMFormatter type exposes the following members.

Methods

	Name	Description
	CompressBAMFile	Compress the specified stream (reader) and writes to the specified stream (writer).
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	Finalize	Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.)
	Format(Stream, ISequenceAlignment)	Writes specified alignment object to a stream. The output is formatted according to the BAM specification. Note that this method does not create index file.
	Format(Stream, IEnumerableISequenceAlignment)	Write a collection of ISequenceAlignments to a file.
	Format(Stream, BAMIndexStorage, ISequenceAlignment)	Writes specified alignment object to a stream. The output is formatted according to the BAM specification.
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	MemberwiseClone	Creates a shallow copy of the current Object. (Inherited from Object.)
	ToString	Returns a string that represents the current object. (Inherited from Object.)
	WriteAlignedSequence	Writes SAMAlignedSequence to specified stream.
	WriteHeader	Writes BAM header to the specified stream in BAM format.