DynamicProgrammingPairwiseAligner.Align Method (ISequence, ISequence)

DynamicProgrammingPairwiseAlignerAlign Method (ISequence, ISequence)

Aligns two sequences using the affine gap metric, a gap open penalty and a gap extension penalty. This method uses the existing gap open and extension penalties and similarity matrix. Set these using GapOpenCost, GapExtensionCost and SimilarityMatrix properties before calling this method.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public IList<IPairwiseSequenceAlignment> Align(
	ISequence sequence1,
	ISequence sequence2
)

Public Function Align ( 
	sequence1 As ISequence,
	sequence2 As ISequence
) As IList(Of IPairwiseSequenceAlignment)

public:
virtual IList<IPairwiseSequenceAlignment^>^ Align(
	ISequence^ sequence1, 
	ISequence^ sequence2
) sealed

abstract Align : 
        sequence1 : ISequence * 
        sequence2 : ISequence -> IList<IPairwiseSequenceAlignment> 
override Align : 
        sequence1 : ISequence * 
        sequence2 : ISequence -> IList<IPairwiseSequenceAlignment>

Parameters

sequence1: Type: BioISequence
First input sequence.
sequence2: Type: BioISequence
Second input sequence.

Return Value

Type: IListIPairwiseSequenceAlignment
A list of sequence alignments.

Implements

IPairwiseSequenceAlignerAlign(ISequence, ISequence)

Reference

DynamicProgrammingPairwiseAligner Class

Align Overload

Bio.Algorithms.Alignment Namespace