DynamicProgrammingPairwiseAligner.Align Method (IEnumerable(ISequence))

DynamicProgrammingPairwiseAlignerAlign Method (IEnumerableISequence)

Aligns two sequences using the affine gap metric, a gap open penalty and a gap extension penalty. This method uses the existing gap open and extension penalties and similarity matrix. Set these using GapOpenCost, GapExtensionCost and SimilarityMatrix properties before calling this method.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public IList<IPairwiseSequenceAlignment> Align(
	IEnumerable<ISequence> inputSequences
)

Public Function Align ( 
	inputSequences As IEnumerable(Of ISequence)
) As IList(Of IPairwiseSequenceAlignment)

public:
IList<IPairwiseSequenceAlignment^>^ Align(
	IEnumerable<ISequence^>^ inputSequences
)

member Align : 
        inputSequences : IEnumerable<ISequence> -> IList<IPairwiseSequenceAlignment>

Parameters

inputSequences: Type: System.Collections.GenericIEnumerableISequence
List of sequences to align. Must contain exactly two sequences.

Return Value

Type: IListIPairwiseSequenceAlignment
A list of sequence alignments.

Reference

DynamicProgrammingPairwiseAligner Class

Align Overload

Bio.Algorithms.Alignment Namespace