MUMmerAligner.Align Method (IEnumerable(ISequence))

MUMmerAlignerAlign Method (IEnumerableISequence)

Align aligns the set of input sequences using the affine gap model (gap open and gap extension penalties) and returns the best alignment found.

Namespace: Bio.Algorithms.MUMmer
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public IList<IPairwiseSequenceAlignment> Align(
	IEnumerable<ISequence> inputSequences
)

Public Function Align ( 
	inputSequences As IEnumerable(Of ISequence)
) As IList(Of IPairwiseSequenceAlignment)

public:
IList<IPairwiseSequenceAlignment^>^ Align(
	IEnumerable<ISequence^>^ inputSequences
)

member Align : 
        inputSequences : IEnumerable<ISequence> -> IList<IPairwiseSequenceAlignment>

inputSequences: Type: System.Collections.GenericIEnumerableISequence
The sequences to align.

Type: IListIPairwiseSequenceAlignment
A list of sequence alignments.