| MummerRnaAlphabet Methods |
The MummerRnaAlphabet type exposes the following members.
| Name | Description | |
|---|---|---|
| AddNucleotide |
Verify whether the nucleotide value or other possible values already exist or not.
(Inherited from RnaAlphabet.) | |
| CheckIsAmbiguous |
Checks if the provided item is an ambiguous character or not
(Inherited from RnaAlphabet.) | |
| CheckIsGap |
Checks if the provided item is a gap character or not
(Inherited from RnaAlphabet.) | |
| CompareSymbols |
Compares two symbols.
(Inherited from RnaAlphabet.) | |
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) | |
| Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) | |
| GetAmbiguousSymbols |
Gets the ambiguous symbols present in alphabet.
(Inherited from RnaAlphabet.) | |
| GetConsensusSymbol |
Find the consensus nucleotide for a set of nucleotides.
(Inherited from AmbiguousRnaAlphabet.) | |
| GetEnumerator |
Byte array of nucleotides.
(Inherited from RnaAlphabet.) | |
| GetFriendlyName |
Gets the friendly name of a given symbol.
(Inherited from RnaAlphabet.) | |
| GetHashCode | Serves as the default hash function. (Inherited from Object.) | |
| GetSymbolValueMap |
Maps A to A and a to A
that is key will contain unique values.
This will be used in the IsValidSymbol method to address Scenarios like a == A, G == g etc.
(Inherited from RnaAlphabet.) | |
| GetType | Gets the Type of the current instance. (Inherited from Object.) | |
| GetValidSymbols |
Get the valid symbols in the alphabet.
(Inherited from RnaAlphabet.) | |
| MapAmbiguousNucleotide |
Maps the ambiguous nucleotide to the nucleotides it represents.
For example ambiguous nucleotide M represents the basic nucleotides A or C.
(Inherited from RnaAlphabet.) | |
| MapComplementNucleotide |
Verify whether the nucleotides exist or not.
(Inherited from RnaAlphabet.) | |
| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) | |
| ToString |
Converts the RNA Alphabets.
(Inherited from RnaAlphabet.) | |
| TryGetAmbiguousSymbol |
Get the ambiguous symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
| TryGetBasicSymbols |
Get the basic symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
| TryGetComplementSymbol(Byte, Byte) |
This method tries to get the complement of this symbol.
(Inherited from RnaAlphabet.) | |
| TryGetComplementSymbol(Byte, Byte) |
This method tries to get the complements for specified symbols.
(Inherited from RnaAlphabet.) | |
| TryGetDefaultGapSymbol |
Try to get the default gap symbol.
(Inherited from RnaAlphabet.) | |
| TryGetDefaultTerminationSymbol |
Get the termination symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
| TryGetGapSymbols |
Get the gap symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
| TryGetTerminationSymbols |
Get the termination symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
| ValidateSequence |
Validates if all symbols provided are RNA symbols or not.
(Inherited from RnaAlphabet.) |