AmbiguousRnaAlphabet Class |
Namespace: Bio
The AmbiguousRnaAlphabet type exposes the following members.
Name | Description | |
---|---|---|
AmbiguousRnaAlphabet |
Initializes a new instance of the AmbiguousRnaAlphabet class.
|
Name | Description | |
---|---|---|
A |
Gets A - Adenine.
(Inherited from RnaAlphabet.) | |
AC |
Gets Ambiguous symbols A-Adenine C-Cytosine.
| |
ACU |
Gets Ambiguous symbols A-Adenine C-Cytosine U-Uracil.
| |
Any |
Gets Ambiguous symbol Any.
| |
AU |
Gets Ambiguous symbols A-Adenine U-Uracil.
| |
C |
Gets C - Cytosine.
(Inherited from RnaAlphabet.) | |
Count |
Gets count of nucleotides.
(Inherited from RnaAlphabet.) | |
G |
Gets G - Guanine.
(Inherited from RnaAlphabet.) | |
GA |
Gets Ambiguous symbols G-Guanine A-Adenine.
| |
Gap |
Gets Default Gap symbol.
(Inherited from RnaAlphabet.) | |
GAU |
Gets Ambiguous symbols G-Guanine A-Adenine U-Uracil.
| |
GC |
Gets Ambiguous symbols G-Guanine C-Cytosine.
| |
GCA |
Gets Ambiguous symbols G-Guanine C-Cytosine A-Adenine.
| |
GU |
Gets Ambiguous symbols G-Guanine U-Uracil.
| |
GUC |
Gets Ambiguous symbols G-Guanine U-Uracil C-Cytosine.
| |
HasAmbiguity |
Gets or sets a value indicating whether this alphabet has ambiguous symbols.
This alphabet does have ambiguous symbols.
(Inherited from RnaAlphabet.) | |
HasGaps |
Gets or sets a value indicating whether this alphabet has a gap symbol.
This alphabet does have a gap symbol.
(Inherited from RnaAlphabet.) | |
HasTerminations |
Gets or sets a value indicating whether this alphabet has termination symbols.
This alphabet does not have termination symbols.
(Inherited from RnaAlphabet.) | |
IsComplementSupported |
Gets or sets a value indicating whether this Complement is supported on this Alphabet.
This alphabet has support for complement.
(Inherited from RnaAlphabet.) | |
Item |
Gets the byte value of item at the given index.
(Inherited from RnaAlphabet.) | |
Name |
Gets or sets Friendly name for Alphabet type.
(Inherited from RnaAlphabet.) | |
U |
Gets U - Uracil.
(Inherited from RnaAlphabet.) | |
UC |
Gets Ambiguous symbols U-Uracil C-Cytosine.
|
Name | Description | |
---|---|---|
AddNucleotide |
Verify whether the nucleotide value or other possible values already exist or not.
(Inherited from RnaAlphabet.) | |
CheckIsAmbiguous |
Checks if the provided item is an ambiguous character or not
(Inherited from RnaAlphabet.) | |
CheckIsGap |
Checks if the provided item is a gap character or not
(Inherited from RnaAlphabet.) | |
CompareSymbols |
Compares two symbols.
(Inherited from RnaAlphabet.) | |
Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) | |
Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) | |
GetAmbiguousSymbols |
Gets the ambiguous symbols present in alphabet.
(Inherited from RnaAlphabet.) | |
GetConsensusSymbol |
Find the consensus nucleotide for a set of nucleotides.
(Overrides RnaAlphabetGetConsensusSymbol(HashSetByte).) | |
GetEnumerator |
Byte array of nucleotides.
(Inherited from RnaAlphabet.) | |
GetFriendlyName |
Gets the friendly name of a given symbol.
(Inherited from RnaAlphabet.) | |
GetHashCode | Serves as the default hash function. (Inherited from Object.) | |
GetSymbolValueMap |
Maps A to A and a to A
that is key will contain unique values.
This will be used in the IsValidSymbol method to address Scenarios like a == A, G == g etc.
(Inherited from RnaAlphabet.) | |
GetType | Gets the Type of the current instance. (Inherited from Object.) | |
GetValidSymbols |
Get the valid symbols in the alphabet.
(Inherited from RnaAlphabet.) | |
MapAmbiguousNucleotide |
Maps the ambiguous nucleotide to the nucleotides it represents.
For example ambiguous nucleotide M represents the basic nucleotides A or C.
(Inherited from RnaAlphabet.) | |
MapComplementNucleotide |
Verify whether the nucleotides exist or not.
(Inherited from RnaAlphabet.) | |
MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) | |
ToString |
Converts the RNA Alphabets.
(Inherited from RnaAlphabet.) | |
TryGetAmbiguousSymbol |
Get the ambiguous symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
TryGetBasicSymbols |
Get the basic symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
TryGetComplementSymbol(Byte, Byte) |
This method tries to get the complement of this symbol.
(Inherited from RnaAlphabet.) | |
TryGetComplementSymbol(Byte, Byte) |
This method tries to get the complements for specified symbols.
(Inherited from RnaAlphabet.) | |
TryGetDefaultGapSymbol |
Try to get the default gap symbol.
(Inherited from RnaAlphabet.) | |
TryGetDefaultTerminationSymbol |
Get the termination symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
TryGetGapSymbols |
Get the gap symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
TryGetTerminationSymbols |
Get the termination symbols if present in the alphabet.
(Inherited from RnaAlphabet.) | |
ValidateSequence |
Validates if all symbols provided are RNA symbols or not.
(Inherited from RnaAlphabet.) |