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AmbiguousRnaAlphabet Methods

The AmbiguousRnaAlphabet type exposes the following members.

Methods
  NameDescription
Protected methodAddNucleotide
Verify whether the nucleotide value or other possible values already exist or not.
(Inherited from RnaAlphabet.)
Public methodCheckIsAmbiguous
Checks if the provided item is an ambiguous character or not
(Inherited from RnaAlphabet.)
Public methodCheckIsGap
Checks if the provided item is a gap character or not
(Inherited from RnaAlphabet.)
Public methodCompareSymbols
Compares two symbols.
(Inherited from RnaAlphabet.)
Public methodEquals
Determines whether the specified object is equal to the current object.
(Inherited from Object.)
Protected methodFinalize
Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection.
(Inherited from Object.)
Public methodGetAmbiguousSymbols
Gets the ambiguous symbols present in alphabet.
(Inherited from RnaAlphabet.)
Public methodGetConsensusSymbol
Find the consensus nucleotide for a set of nucleotides.
(Overrides RnaAlphabetGetConsensusSymbol(HashSetByte).)
Public methodGetEnumerator
Byte array of nucleotides.
(Inherited from RnaAlphabet.)
Public methodGetFriendlyName
Gets the friendly name of a given symbol.
(Inherited from RnaAlphabet.)
Public methodGetHashCode
Serves as the default hash function.
(Inherited from Object.)
Public methodGetSymbolValueMap
Maps A to A and a to A that is key will contain unique values. This will be used in the IsValidSymbol method to address Scenarios like a == A, G == g etc.
(Inherited from RnaAlphabet.)
Public methodGetType
Gets the Type of the current instance.
(Inherited from Object.)
Public methodGetValidSymbols
Get the valid symbols in the alphabet.
(Inherited from RnaAlphabet.)
Protected methodMapAmbiguousNucleotide
Maps the ambiguous nucleotide to the nucleotides it represents. For example ambiguous nucleotide M represents the basic nucleotides A or C.
(Inherited from RnaAlphabet.)
Protected methodMapComplementNucleotide
Verify whether the nucleotides exist or not.
(Inherited from RnaAlphabet.)
Protected methodMemberwiseClone
Creates a shallow copy of the current Object.
(Inherited from Object.)
Public methodToString
Converts the RNA Alphabets.
(Inherited from RnaAlphabet.)
Public methodTryGetAmbiguousSymbol
Get the ambiguous symbols if present in the alphabet.
(Inherited from RnaAlphabet.)
Public methodTryGetBasicSymbols
Get the basic symbols if present in the alphabet.
(Inherited from RnaAlphabet.)
Public methodTryGetComplementSymbol(Byte, Byte)
This method tries to get the complement of this symbol.
(Inherited from RnaAlphabet.)
Public methodTryGetComplementSymbol(Byte, Byte)
This method tries to get the complements for specified symbols.
(Inherited from RnaAlphabet.)
Public methodTryGetDefaultGapSymbol
Try to get the default gap symbol.
(Inherited from RnaAlphabet.)
Public methodTryGetDefaultTerminationSymbol
Get the termination symbols if present in the alphabet.
(Inherited from RnaAlphabet.)
Public methodTryGetGapSymbols
Get the gap symbols if present in the alphabet.
(Inherited from RnaAlphabet.)
Public methodTryGetTerminationSymbols
Get the termination symbols if present in the alphabet.
(Inherited from RnaAlphabet.)
Public methodValidateSequence
Validates if all symbols provided are RNA symbols or not.
(Inherited from RnaAlphabet.)
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See Also