QualitativeSequence Constructor (IAlphabet, FastQFormatType, String, String)

Initializes a new instance of the QualitativeSequence class with specified alphabet, quality score type, string representing symbols and encoded quality scores. Sequence and quality scores are validated with the specified alphabet and specified fastq format respectively.

Namespace: Bio
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public QualitativeSequence(
	IAlphabet alphabet,
	FastQFormatType fastQFormatType,
	string sequence,
	string encodedQualityScores
)

Public Sub New ( 
	alphabet As IAlphabet,
	fastQFormatType As FastQFormatType,
	sequence As String,
	encodedQualityScores As String
)

public:
QualitativeSequence(
	IAlphabet^ alphabet, 
	FastQFormatType fastQFormatType, 
	String^ sequence, 
	String^ encodedQualityScores
)

new : 
        alphabet : IAlphabet * 
        fastQFormatType : FastQFormatType * 
        sequence : string * 
        encodedQualityScores : string -> QualitativeSequence

Parameters

alphabet: Type: BioIAlphabet
Alphabet to which this instance should conform.
fastQFormatType: Type: BioFastQFormatType
FastQ format type.
sequence: Type: SystemString
A string representing the symbols.
encodedQualityScores: Type: SystemString
A string representing the encoded quality scores.

Reference

QualitativeSequence Class

QualitativeSequence Overload

Bio Namespace