Initializes a new instance of the MUMmerAligner class. Constructor for all the pairwise aligner (NeedlemanWunsch, SmithWaterman, Overlap). Sets default similarity matrix and gap penalty. Users will typically reset these using parameters specific to their particular sequences and needs.

public MUMmerAligner()

Public Sub New

public:
MUMmerAligner()

new : unit -> MUMmerAligner