| SimilarityMatrixStandardSimilarityMatrix Enumeration |
List of available standard similarity matrices.
Namespace: Bio.SimilarityMatrices
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxMembers| Member name | Value | Description | |
|---|---|---|---|
| Blosum45 | 0 | BLOSUM45 Similarity Matrix. | |
| Blosum50 | 1 | BLOSUM50 Similarity Matrix. | |
| Blosum62 | 2 | BLOSUM62 Similarity Matrix. | |
| Blosum80 | 3 | BLOSUM80 Similarity Matrix. | |
| Blosum90 | 4 | BLOSUM90 Similarity Matrix. | |
| Pam250 | 5 | PAM250 Similarity Matrix. | |
| Pam30 | 6 | PAM30 Similarity Matrix. | |
| Pam70 | 7 | PAM70 Similarity Matrix. | |
| AmbiguousDna | 8 | Simple DNA Similarity Matrix. | |
| AmbiguousRna | 9 | RNA with ambiguous. | |
| DiagonalScoreMatrix | 10 | Diagonal matrix. | |
| EDnaFull | 11 | EDNAFull Similarity Matrix. |
Remarks
BLOSUM matrices reference:
S Henikoff and J G Henikoff,
"Amino acid substitution matrices from protein blocks."
Proc Natl Acad Sci U S A. 1992 November 15; 89(22): 10915–10919. PMCID: PMC50453
Available at: http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1438297
PAM matrices reference: Dayhoff, M.O., Schwartz, R. and Orcutt, B.C. (1978), "A model of Evolutionary Change in Proteins", Atlas of protein sequence and structure (volume 5, supplement 3 ed.), Nat. Biomed. Res. Found., p. 345-358, ISBN 0912466073.
See Also