Gets aligned sequences with equal length by inserting gaps '-' at appropriate positions so that the alignment score is optimized.

Gets the alignment score of the multiple sequence alignment. A typical score is the summation of pairwise alignment scores.

Gets or sets the object that will be used to compute the alignment's consensus.

Gets the description of the sequence alignment algorithm being implemented.This is intended to give developer some information of the alignment algorithm.

Gets or sets value of GapExtensionCost The GapExtensionCost is the cost of extending an already existing gap. This is used for the affine gap model, not used for the linear gap model.

Gets or sets value of GapOpenCost The GapOpenCost is the cost of inserting a gap character into a sequence.

Gets the name of the sequence alignment algorithm being implemented. This is intended to give developer some information of the alignment algorithm.

Gets or sets value of similarity matrix The similarity matrix determines the score for any possible pair of symbols that are encountered at a common location across the sequences being aligned.