DynamicProgrammingPairwiseAligner.AlignSimple Method (IEnumerable(ISequence))

DynamicProgrammingPairwiseAlignerAlignSimple Method (IEnumerableISequence)

Aligns two sequences using a linear gap parameter, using existing gap open cost and similarity matrix. Set these using GapOpenCost and SimilarityMatrix properties before calling this method.

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

Copy

public IList<IPairwiseSequenceAlignment> AlignSimple(
	IEnumerable<ISequence> inputSequences
)

Public Function AlignSimple ( 
	inputSequences As IEnumerable(Of ISequence)
) As IList(Of IPairwiseSequenceAlignment)

public:
IList<IPairwiseSequenceAlignment^>^ AlignSimple(
	IEnumerable<ISequence^>^ inputSequences
)

member AlignSimple : 
        inputSequences : IEnumerable<ISequence> -> IList<IPairwiseSequenceAlignment>

Parameters

inputSequences: Type: System.Collections.GenericIEnumerableISequence
List of sequences to align. Must contain exactly two sequences.

Return Value

Type: IListIPairwiseSequenceAlignment
A list of sequence alignments.

Reference

DynamicProgrammingPairwiseAligner Class

AlignSimple Overload

Bio.Algorithms.Alignment Namespace