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DynamicProgrammingPairwiseAlignerAlignSimple Method
Overload List
  NameDescription
Public methodAlignSimple(IEnumerableISequence)
Aligns two sequences using a linear gap parameter, using existing gap open cost and similarity matrix. Set these using GapOpenCost and SimilarityMatrix properties before calling this method.
Public methodAlignSimple(ISequence, ISequence)
Aligns two sequences using a linear gap parameter, using existing gap open cost and similarity matrix. Set these using GapOpenCost and SimilarityMatrix properties before calling this method.
Public methodAlignSimple(SimilarityMatrix, Int32, ISequence, ISequence)
Pairwise alignment of two sequences using a linear gap penalty. The various algorithms in derived classes (NeedlemanWunsch, SmithWaterman, and PairwiseOverlap) all use this general engine for alignment with a linear gap penalty.
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