DynamicProgrammingPairwiseAlignerAlignSimple Method |
Name | Description | |
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AlignSimple(IEnumerableISequence) |
Aligns two sequences using a linear gap parameter, using existing gap open cost and similarity matrix.
Set these using GapOpenCost and SimilarityMatrix properties before calling this method.
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AlignSimple(ISequence, ISequence) |
Aligns two sequences using a linear gap parameter, using existing gap open cost and similarity matrix.
Set these using GapOpenCost and SimilarityMatrix properties before calling this method.
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AlignSimple(SimilarityMatrix, Int32, ISequence, ISequence) |
Pairwise alignment of two sequences using a linear gap penalty. The various algorithms in derived classes (NeedlemanWunsch,
SmithWaterman, and PairwiseOverlap) all use this general engine for alignment with a linear gap penalty.
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