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DeltaAlignmentCollection Class
This class provides indexer access to the DeltaAlignments stored in the specified delta alignment file. This class uses a file to hold DeltaAlignment id's from the deltaAlignment file. As the id of delta alignment itself is the location in the file, using DeltaAlignmentParser and FastASequencePositionParser this class gets the delta alignment on demand.
Inheritance Hierarchy
SystemObject
  Bio.UtilDeltaAlignmentCollection

Namespace: Bio.Util
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax
public class DeltaAlignmentCollection : IDisposable

The DeltaAlignmentCollection type exposes the following members.

Constructors
  NameDescription
Public methodDeltaAlignmentCollection(Stream, FastASequencePositionParser)
Initializes a new instance of the DeltaAlignmentCollection class.
Public methodDeltaAlignmentCollection(Stream, Stream)
Initializes a new instance of the DeltaAlignmentCollection class.
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Properties
  NameDescription
Public propertyCount
Gets the no of delta alignment present in this collection.
Public propertyDeltaAlignmentParser
Gets the DeltaAlignment parser.
Public propertyDeltaAlignmentStream
Gets Delta alignments file name.
Public propertyItem
Gets the Delta alignment present at the specified index.
Public propertyQueryStream
Gets Query or read file name.
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Methods
  NameDescription
Public methodDispose
Disposes the underlying streams used.
Protected methodDispose(Boolean)
Disposes the underlying streams used.
Public methodEquals
Determines whether the specified object is equal to the current object.
(Inherited from Object.)
Protected methodFinalize
Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection.
(Inherited from Object.)
Public methodGetDeltaAlignmentFor
Gets the list of delta alignments for the specified sequence id.
Public methodGetDeltaAlignmentsByReads
Gets Delta alignments grouped by read sequence id.
Public methodGetHashCode
Serves as the default hash function.
(Inherited from Object.)
Public methodGetType
Gets the Type of the current instance.
(Inherited from Object.)
Protected methodMemberwiseClone
Creates a shallow copy of the current Object.
(Inherited from Object.)
Public methodToString
Returns a string that represents the current object.
(Inherited from Object.)
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See Also