| ProteinAlphabet Methods |
The ProteinAlphabet type exposes the following members.
Methods| Name | Description | |
|---|---|---|
 | AddAminoAcid |
Adds a Amino acid to the existing amino acids.
|
 | CheckIsAmbiguous |
Checks if the provided item is an ambiguous character or not
|
| CheckIsGap |
Checks if the provided item is a gap character or not
|
| CompareSymbols |
Compares two symbols.
|
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
| Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) |
| GetAmbiguousSymbols |
Gets the ambigious characters present in alphabet.
|
| GetConsensusSymbol |
Find the consensus nucleotide for a set of nucleotides.
|
| GetEnumerator |
Byte array of nucleotides.
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| GetFriendlyName |
Gets the friendly name of a given symbol.
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| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
| GetSymbolValueMap |
Maps A to A and a to A
that is key will contain unique values.
This will be used in the IsValidSymbol method to address Scenarios like a == A, G == g etc.
|
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| GetValidSymbols |
Gets the valid symbol.
|
| MapAmbiguousAminoAcid |
Maps the ambiguous amino acids to the amino acids it represents.
For example ambiguous amino acids M represents the basic nucleotides A or C.
|
| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) |
| ToString |
Converts the Protein Alphabets to string.
(Overrides ObjectToString.) |
| TryGetAmbiguousSymbol |
Gets the Ambiguous symbol.
|
| TryGetBasicSymbols |
Gets the Basic symbol.
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| TryGetComplementSymbol(Byte, Byte) |
Gets the complement of the symbol.
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| TryGetComplementSymbol(Byte, Byte) |
This method tries to get the complements for specified symbols.
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| TryGetDefaultGapSymbol |
Gets the default Gap symbol.
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| TryGetDefaultTerminationSymbol |
Gets the default Termination symbol.
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| TryGetGapSymbols |
Gets the Gap symbol.
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| TryGetTerminationSymbols |
Gets the Termination symbol.
|
| ValidateSequence |
Validates if all symbols provided are Protein symbols or not.
|
Extension Methods| Name | Description | |
|---|---|---|
 | AppendByte(Byte) | Overloaded.
Yield an Enumeration of the list with the item appended to the end
(Defined by IEnumerableExtensions.) |
| AppendByte(IEnumerableByte) | Overloaded.
Yield a concatenation of the two Enumerable lists
(Defined by IEnumerableExtensions.) |
| CheckIsAmbiguous |
Checks if the provided item is an ambiguous character or not
(Defined by AlphabetExtensions.) |
| CheckIsGap |
Checks if the provided item is a gap character or not
(Defined by AlphabetExtensions.) |
| CheckIsTermination(Byte) | Overloaded.
This returns true/false if the given symbol value is considered a termination
value in the alphabet.
(Defined by AlphabetExtensions.) |
| CheckIsTermination(Char) | Overloaded.
This returns true/false if the given symbol value is considered a termination
value in the alphabet.
(Defined by AlphabetExtensions.) |
| ElementAtByte |
Returns the element at a specified index in a sequence.
(Defined by IEnumerableExtensions.) |
| ForEachByte(ActionByte) | Overloaded.
Calls an action on each element of a sequence. The action takes one argument: an element. It has no return value.
(Defined by IEnumerableExtensions.) |
| ForEachByte(ActionByte, Int32) | Overloaded.
Calls an action on each element of a sequence. The action takes two arguments: an element and the index of the element.
It has no return value.
(Defined by IEnumerableExtensions.) |
| GetFriendlyName |
Gets the friendly name of a given symbol.
(Defined by AlphabetExtensions.) |
| GetMummerAlphabet |
Find corresponding mummer alphabet which supports the concatenation symbol using an existing alphabet
(Defined by MummerAlphabetExtensions.) |
| ShuffleByte |
Shuffles the elements of a sequence.
(Defined by IEnumerableExtensions.) |
| StringJoin | Overloaded.
Creates a string from a sequence of elements. No delimiter is used.
(Defined by IEnumerableExtensions.) |
| StringJoin(String) | Overloaded.
Creates a delimited string from a sequence of elements.
(Defined by IEnumerableExtensions.) |
| StringJoin(String, Int32, String) | Overloaded.
Creates a delimited string from a sequence of elements. At most maxLength elements will be used and "..." shows that more elements were in the list.
(Defined by IEnumerableExtensions.) |
| SubSequenceByte |
Take the items from a sequence starting with item # start (index 0) and contining for count items.
(Defined by IEnumerableExtensions.) |
| ToHashSetByte | Overloaded.
Creates a HashSet from a sequence. If the sequence is already a HashSet, a new HashSet is still created.
(Defined by IEnumerableExtensions.) |
| ToHashSetByte(IEqualityComparerByte) | Overloaded.
Creates a HashSet from a sequence. If the sequence is already a HashSet, a new HashSet is still created.
(Defined by IEnumerableExtensions.) |
| ToQueueByte |
Creates a Queue from a sequence. If the sequence is already a Queue, a new Queue is still created.
(Defined by IEnumerableExtensions.) |
See Also