Bio.IO.Bed Namespace |
[Missing <summary> documentation for "N:Bio.IO.Bed"]
Class | Description | |
---|---|---|
BedFormatter |
Formats lists of ISequenceRange or SequenceRangeGroupings into a file
formatted in the BED format.
Info for the specification of this format can be found at:
http://genome.ucsc.edu/FAQ/FAQformat
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BedParser |
Parses ISequenceRange objects that are formatted according to the BED
format. This is a format of tab delimited text where the each line
represents one range and each defines an ID, start and stop index.
Info for the specification of this format can be found at:
http://genome.ucsc.edu/FAQ/FAQformat
In this format indices start their count from zero. The chromosome start
index is inclusive and the chromosome end index is exclusive.
There are three required fields in each line as described above. There
are also 9 option fields. These are: name, score, strand, thickStartm
thickEnd, itemRgb, blockCount, blockSizes, and blockStarts.
This parser does not support the bigBED format.
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