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BedParser Class
Parses ISequenceRange objects that are formatted according to the BED format. This is a format of tab delimited text where the each line represents one range and each defines an ID, start and stop index. Info for the specification of this format can be found at: http://genome.ucsc.edu/FAQ/FAQformat In this format indices start their count from zero. The chromosome start index is inclusive and the chromosome end index is exclusive. There are three required fields in each line as described above. There are also 9 option fields. These are: name, score, strand, thickStartm thickEnd, itemRgb, blockCount, blockSizes, and blockStarts. This parser does not support the bigBED format.
Inheritance Hierarchy
SystemObject
  Bio.IO.BedBedParser

Namespace: Bio.IO.Bed
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax
public class BedParser : ISequenceRangeParser, IParser

The BedParser type exposes the following members.

Constructors
  NameDescription
Public methodBedParser
Initializes a new instance of the BedParser class
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Properties
  NameDescription
Public propertyDescription
A short description of the BED parser
Public propertyName
The name of this parser: BED
Public propertySupportedFileTypes
Known file extensions for BED files
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Methods
  NameDescription
Public methodEquals
Determines whether the specified object is equal to the current object.
(Inherited from Object.)
Protected methodFinalize
Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection.
(Inherited from Object.)
Public methodGetHashCode
Serves as the default hash function.
(Inherited from Object.)
Public methodGetType
Gets the Type of the current instance.
(Inherited from Object.)
Protected methodMemberwiseClone
Creates a shallow copy of the current Object.
(Inherited from Object.)
Public methodParseRange
Parse a set of ISequenceRange objects from a stream.
Public methodParseRangeGrouping
Parse a set of ISequenceRange objects into a SequenceRange grouping from a stream.
Public methodToString
Returns a string that represents the current object.
(Inherited from Object.)
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See Also